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Welcome
How to use this book
Using Google Colab
Glossary
Underlying concepts
The basic model
Time to coalescence
Nucleotide diversity
Haplotype homozygosity
Identity by descent
How to use
coalestr
Create a
Population
get_coalescent
get_diversity
Within-host diversity
Within-host
\(\pi_W\)
Hw - Hs
relationship
Rate of superinfection
Migration and population structure
Create a metapopulation
Create a subpopulation
Epidemiological scenarios
Analysing a time series
Transient scenarios
A local outbreak
Repository
Open issue
Index
